Protein structure topological comparison, discovery and matching service
نویسندگان
چکیده
UNLABELLED We describe a fold level fast protein comparison and motif matching facility based on the TOPS representation of structure. This provides an update to a previous service at the EBI, with a better graph matching with faster results and visualization of both the structures being compared against and the common pattern of each with the target domain. AVAILABILITY Web service at http://balabio.dcs.gla.ac.uk/tops or via the main TOPS site at http://www.tops.leeds.ac.uk. Software is also available for download from these sites.
منابع مشابه
Comparison of Web Service Similarity- Assessment Methods
Due to the advent of service oriented architecture, web services have gained popularity. The need for efficient web service discovery increases because of the enormous growth of the web services. The main concern of this paper is to addresses the challenge of automated web service discovery and service similarity assessment. It utilizes the WordNet and a traditional information retrieval method...
متن کاملA constraint{based system for protein motif{searching, pattern discovery and structure comparison
We describe the design and testing of a constraint{based system for searching protein databases, pattern discovery and protein structure comparison. The approach is based on the TOPS topological representation of protein structure, using the formal version of the TOPS language we have made, and incorporates constraints over nite domains. Searching is achieved using an eecient constraint{based a...
متن کاملA Method of Structure Comparison using Spatial Topological Patterns
The problem of comparison of structural similarity has been complex and computationally expensive. The first step to solve comparison of structural similarity in 3D structure databases is to develop fast methods for structural similarity. Therefore, we propose a new method of comparing structural similarity in protein structure databases by using topological patterns of proteins. In our approac...
متن کاملDistributed Service Discovery Algorithm Based on Ant Colony Algorithm
UDDI is a universal description, discovery and integration protocol. As a public registry of Web service, it is designed to store information about each company and its service. Traditional centralized service discovery structure of UDDI service registration center does not apply to largescale service discovery. When all the services register to a center, the service bottleneck, failure of sing...
متن کاملSemantic Web Service Discovery Algorithm based on Constraint Extraction and Structure Analysis
As the Internet Web services increased, how to find a web service which can meet user's requirements quickly and accurately has become a problem to be solved .Now many kinds of web service methods based on semantic are based IO matching .They used other ways to supplement while semantic matching is failed. However the accuracy of semantic web service discovery based on IO matching purely is not...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Bioinformatics
دوره 21 10 شماره
صفحات -
تاریخ انتشار 2005